Package: altmeta 4.2

altmeta: Alternative Meta-Analysis Methods

Provides alternative statistical methods for meta-analysis, including: - bivariate generalized linear mixed models for synthesizing odds ratios, relative risks, and risk differences (Chu et al., 2012 <doi:10.1177/0962280210393712>) - heterogeneity tests and measures and penalization methods that are robust to outliers (Lin et al., 2017 <doi:10.1111/biom.12543>; Wang et al., 2022 <doi:10.1002/sim.9261>); - measures, tests, and visualization tools for publication bias or small-study effects (Lin and Chu, 2018 <doi:10.1111/biom.12817>; Lin, 2019 <doi:10.1002/jrsm.1340>; Lin, 2020 <doi:10.1177/0962280220910172>; Shi et al., 2020 <doi:10.1002/jrsm.1415>); - meta-analysis of combining standardized mean differences and odds ratios (Jing et al., 2023 <doi:10.1080/10543406.2022.2105345>); - meta-analysis of diagnostic tests for synthesizing sensitivities, specificities, etc. (Reitsma et al., 2005 <doi:10.1016/j.jclinepi.2005.02.022>; Chu and Cole, 2006 <doi:10.1016/j.jclinepi.2006.06.011>); - meta-analysis methods for synthesizing proportions (Lin and Chu, 2020 <doi:10.1097/ede.0000000000001232>); - models for multivariate meta-analysis, measures of inconsistency degrees of freedom in Bayesian network meta-analysis, and predictive P-score (Lin and Chu, 2018 <doi:10.1002/jrsm.1293>; Lin, 2020 <doi:10.1080/10543406.2020.1852247>; Rosenberger et al., 2021 <doi:10.1186/s12874-021-01397-5>).

Authors:Lifeng Lin [aut, cre], Yaqi Jing [ctb], Kristine J. Rosenberger [ctb], Linyu Shi [ctb], Yipeng Wang [ctb], Haitao Chu [aut]

altmeta_4.2.tar.gz
altmeta_4.2.zip(r-4.5)altmeta_4.2.zip(r-4.4)altmeta_4.2.zip(r-4.3)
altmeta_4.2.tgz(r-4.4-any)altmeta_4.2.tgz(r-4.3-any)
altmeta_4.2.tar.gz(r-4.5-noble)altmeta_4.2.tar.gz(r-4.4-noble)
altmeta_4.2.tgz(r-4.4-emscripten)altmeta_4.2.tgz(r-4.3-emscripten)
altmeta.pdf |altmeta.html✨
altmeta/json (API)

# Install 'altmeta' in R:
install.packages('altmeta', repos = c('https://linlf.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • dat.adams - A Meta-Analysis on the Effects of Fluvastatin 20 mg/day on High-Density Lipoprotein
  • dat.aex - A Meta-Analysis for Evaluating the Effect of Aerobic Exercise on Visceral Adipose Tissue Content/Volume
  • dat.annane - A Meta-Analysis for Comparing the Effect of Steroids vs. Control in the Length of Intensive Care Unit (ICU) Stay
  • dat.baker - A Network Meta-Analysis on Effects of Pharmacologic Treatments for Chronic Obstructive Pulmonary Disease
  • dat.barlow - A Meta-Analysis on the Effect of Parent Training Programs vs. Control for Improving Parental Psychosocial Health Within 4 Weeks After Intervention
  • dat.beck17 - A Meta-Analysis of Prevalence of Depression or Depressive Symptoms Among Medical Students
  • dat.bellamy - A Meta-Analysis on Type 2 Diabetes Mellitus After Gestational Diabetes
  • dat.bjelakovic - A Meta-Analysis on the Beneficial and Harmful Effects of Vitamin D Supplementation for the Prevention of Mortality in Healthy Adults and Adults in a Stable Phase of Disease
  • dat.bohren - A Meta-Analysis on the Effects of Continuous, One-To-One Intrapartum Support on Spontaneous Vaginal Births, Compared With Usual Care
  • dat.butters - A Meta-Analysis on the Overall Response of the Addition of Drugs to a Chemotherapy Regimen for Metastatic Breast Cancer
  • dat.carless - A Meta-Analysis on the Efficacy of Platelet-Rich-Plasmapheresis in Reducing Peri-Operative Allogeneic Red Blood Cell Transfusion in Cardiac Surgery
  • dat.chor - A Meta-Analysis of Proportions on Chorioamnionitis
  • dat.dep - A Meta-Analysis of Binary and Continuous Outcomes on Depression
  • dat.ducharme - A Meta-Analysis on the Effect of Long-Acting Inhaled Beta2-Agonists vs. Control for Chronic Asthma
  • dat.fib - A Multivariate Meta-Analysis by the Fibrinogen Studies Collaboration
  • dat.ha - A Meta-Analysis on the Effect of Placebo Interventions for All Clinical Conditions Regarding Patient-Reported Outcomes
  • dat.henry - A Meta-Analysis for Evaluating the Effect of Tranexamic Acid on Perioperative Allogeneic Blood Transfusion
  • dat.hipfrac - A Meta-Analysis on the Magnitude and Duration of Excess Mortality After Hip Fracture Among Older Men
  • dat.kaner - A Meta-Analysis on the Effect of Brief Alcohol Interventions vs. Control in Primary Care Populations
  • dat.lcj - A Meta-Analysis on the Effect of Progressive Resistance Strength Training Exercise vs. Control
  • dat.paige - A Meta-Analysis on the Effectiveness of Spinal Manipulative Therapies
  • dat.plourde - A Meta-Analysis for Comparing the Fluoroscopy Time in Percutaneous Coronary Intervention Between Radial and Femoral Accesses
  • dat.poole - A Meta-Analysis for Evaluating the Effect of Mucolytic on Bronchitis/Chronic Obstructive Pulmonary Disease
  • dat.pte - Meta-Analysis of Multiple Risk Factors for Pterygium
  • dat.sc - A Network Meta-Analysis on Smoking Cessation
  • dat.scheidler - Meta-Analysis on the Utility of Lymphangiography, Computed Tomography, and Magnetic Resonance Imaging for the Diagnosis of Lymph Node Metastasis
  • dat.slf - A Meta-Analysis on the Effect of Nicotine Gum for Smoking Cessation
  • dat.smith - Meta-Analysis on the Diagnostic Accuracy of Ultrasound for Detecting Partial Thickness Rotator Cuff Tears
  • dat.whiting - A Meta-Analysis on Adverse Events for the Comparison Cannabinoid vs. Placebo
  • dat.williams - A Meta-Analysis on the Effect of Pharmacotherapy for Social Anxiety Disorder
  • dat.xu - A Network Meta-Analysis on Immune Checkpoint Inhibitor Drugs

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.04 score 11 scripts 427 downloads 19 exports 17 dependencies

Last updated 3 months agofrom:786049edf3. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 07 2024
R-4.5-winOKNov 07 2024
R-4.5-linuxOKNov 07 2024
R-4.4-winOKNov 07 2024
R-4.4-macOKNov 07 2024
R-4.3-winOKNov 07 2024
R-4.3-macOKNov 07 2024

Exports:maprop.glmmmaprop.twostepmeta.bivmeta.dtmeta.or.smdmeta.penmetahetmetaoutliersmetapbmvmamvma.bayesianmvma.hybridmvma.hybrid.bayesiannma.icdfnma.predrankpb.bayesian.binarypb.hybrid.binarypb.hybrid.genericssfunnel

Dependencies:bootcodalatticelme4MASSmathjaxrMatrixmetadatmetaforminqanlmenloptrnumDerivpbapplyRcppRcppEigenrjags

Readme and manuals

Help Manual

Help pageTopics
A Meta-Analysis on the Effects of Fluvastatin 20 mg/day on High-Density Lipoproteindat.adams
A Meta-Analysis for Evaluating the Effect of Aerobic Exercise on Visceral Adipose Tissue Content/Volumedat.aex
A Meta-Analysis for Comparing the Effect of Steroids vs. Control in the Length of Intensive Care Unit (ICU) Staydat.annane
A Network Meta-Analysis on Effects of Pharmacologic Treatments for Chronic Obstructive Pulmonary Diseasedat.baker
A Meta-Analysis on the Effect of Parent Training Programs vs. Control for Improving Parental Psychosocial Health Within 4 Weeks After Interventiondat.barlow
A Meta-Analysis of Prevalence of Depression or Depressive Symptoms Among Medical Studentsdat.beck17
A Meta-Analysis on Type 2 Diabetes Mellitus After Gestational Diabetesdat.bellamy
A Meta-Analysis on the Beneficial and Harmful Effects of Vitamin D Supplementation for the Prevention of Mortality in Healthy Adults and Adults in a Stable Phase of Diseasedat.bjelakovic
A Meta-Analysis on the Effects of Continuous, One-To-One Intrapartum Support on Spontaneous Vaginal Births, Compared With Usual Caredat.bohren
A Meta-Analysis on the Overall Response of the Addition of Drugs to a Chemotherapy Regimen for Metastatic Breast Cancerdat.butters
A Meta-Analysis on the Efficacy of Platelet-Rich-Plasmapheresis in Reducing Peri-Operative Allogeneic Red Blood Cell Transfusion in Cardiac Surgerydat.carless
A Meta-Analysis of Proportions on Chorioamnionitisdat.chor
A Meta-Analysis of Binary and Continuous Outcomes on Depressiondat.dep
A Meta-Analysis on the Effect of Long-Acting Inhaled Beta2-Agonists vs. Control for Chronic Asthmadat.ducharme
A Multivariate Meta-Analysis by the Fibrinogen Studies Collaborationdat.fib
A Meta-Analysis on the Effect of Placebo Interventions for All Clinical Conditions Regarding Patient-Reported Outcomesdat.ha
A Meta-Analysis for Evaluating the Effect of Tranexamic Acid on Perioperative Allogeneic Blood Transfusiondat.henry
A Meta-Analysis on the Magnitude and Duration of Excess Mortality After Hip Fracture Among Older Mendat.hipfrac
A Meta-Analysis on the Effect of Brief Alcohol Interventions vs. Control in Primary Care Populationsdat.kaner
A Meta-Analysis on the Effect of Progressive Resistance Strength Training Exercise vs. Controldat.lcj
A Meta-Analysis on the Effectiveness of Spinal Manipulative Therapies (Other Than Sham)dat.paige
A Meta-Analysis for Comparing the Fluoroscopy Time in Percutaneous Coronary Intervention Between Radial and Femoral Accessesdat.plourde
A Meta-Analysis for Evaluating the Effect of Mucolytic on Bronchitis/Chronic Obstructive Pulmonary Diseasedat.poole
Meta-Analysis of Multiple Risk Factors for Pterygiumdat.pte
A Network Meta-Analysis on Smoking Cessationdat.sc
Meta-Analysis on the Utility of Lymphangiography, Computed Tomography, and Magnetic Resonance Imaging for the Diagnosis of Lymph Node Metastasisdat.scheidler
A Meta-Analysis on the Effect of Nicotine Gum for Smoking Cessationdat.slf
Meta-Analysis on the Diagnostic Accuracy of Ultrasound for Detecting Partial Thickness Rotator Cuff Tearsdat.smith
A Meta-Analysis on Adverse Events for the Comparison Cannabinoid vs. Placebodat.whiting
A Meta-Analysis on the Effect of Pharmacotherapy for Social Anxiety Disorderdat.williams
A Network Meta-Analysis on Immune Checkpoint Inhibitor Drugsdat.xu
Meta-Analysis of Proportions Using Generalized Linear Mixed Modelsmaprop.glmm
Meta-Analysis of Proportions Using Two-Step Methodsmaprop.twostep
Bivariate Method for Meta-Analysis.meta.biv
Meta-Analysis of Diagnostic Testsmeta.dt
Meta-Analysis of Combining Standardized Mean Differences and Odds Ratiosmeta.or.smd
A penalization approach to random-effects meta-analysismeta.pen
Meta-Analysis Heterogeneity Measuresmetahet
Outlier Detection in Meta-Analysismetaoutliers
Detecting and Quantifying Publication Bias/Small-Study Effectsmetapb
Multivariate Meta-Analysismvma
Bayesian Random-Effects Multivariate Meta-Analysismvma.bayesian
Hybrid Model for Random-Effects Multivariate Meta-Analysismvma.hybrid
Bayesian Hybrid Model for Random-Effects Multivariate Meta-Analysismvma.hybrid.bayesian
Evidence Inconsistency Degrees of Freedom in Bayesian Network Meta-Analysisnma.icdf
Predictive P-Score for Treatment Ranking in Bayesian Network Meta-Analysisnma.predrank
Bayesian Method for Assessing Publication Bias/Small-Study Effects in Meta-Analysis of a Binary Outcomepb.bayesian.binary
Hybrid Test for Publication Bias/Small-Study Effects in Meta-Analysis With Binary Outcomespb.hybrid.binary
Hybrid Test for Publication Bias/Small-Study Effects in Meta-Analysis With Generic Outcomespb.hybrid.generic
Plot for Meta-Analysis of Diagnostic Testsplot.meta.dt
Standardized Residual Plot for Outliers Diagnosticsplot.metaoutliers
Print Method for "meta.dt" Objectsprint.meta.dt
Contour-Enhanced Sample-Size-Based Funnel Plotssfunnel